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May 062013
 

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TransFIC

:: DESCRIPTION

TransFIC is a method to transform Functional Impact scores taking into account the differences in basal tolerance to germline SNVs of genes that belong to different functional classes. This transformation allows to use the scores provided by well-known tools (e.g. SIFT, Polyphen2, MutationAssessor) to rank the functional impact of cancer somatic mutations. Mutations with greater transFIC are more likely to be cancer drivers.

::DEVELOPER

 The Biomedical Genomics Group

:: SCREENSHOTS

N/A

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:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Perl

:: DOWNLOAD

 TransFIC

:: MORE INFORMATION

Citation

Abel Gonzalez-Perez, Jordi Deu-Pons and Lopez-Bigas N.
Improving the prediction of the functional impact of cancer mutations by baseline tolerance transformation.
Genome Medicine. 2012. 4:89 doi:10.1186/gm390.

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