TopiaryExplorer supports visualization of very large trees (it has been tested on trees with > 100,000 tips) while providing convenient interfaces for decorating the tree with taxonomic information, automatically coloring branches based on data about environments where they are observed, selecting subtrees for independent analysis, interactive expanding and collapsing of clades, and many other features.
- Linux / Windows /MacOsX
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Pirrung, M., R. Kennedy, J. G. Caporaso, J. Stombaugh, D. Wendel, and R. Knight. 2011.
TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata.
Bioinformatics 27, no. 21 (October 21): 3067–3069. http://dx.doi.org/10.1093/bioinformatics/btr517.