Sep 082015
 

TopiaryExplorer 1.0

:: DESCRIPTION

TopiaryExplorer supports visualization of very large trees (it has been tested on trees with > 100,000 tips) while providing convenient interfaces for decorating the tree with taxonomic information, automatically coloring branches based on data about environments where they are observed, selecting subtrees for independent analysis, interactive expanding and collapsing of clades, and many other features.

::DEVELOPER

Knight Lab

:: SCREENSHOTS

TopiaryExplorer

:: REQUIREMENTS

  • Linux / Windows /MacOsX
  • Java

:: DOWNLOAD

 TopiaryExplorer

:: MORE INFORMATION

Citation

Pirrung, M., R. Kennedy, J. G. Caporaso, J. Stombaugh, D. Wendel, and R. Knight. 2011.
TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata.
Bioinformatics 27, no. 21 (October 21): 3067–3069. http://dx.doi.org/10.1093/bioinformatics/btr517.

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