TMARG is a program that takes SNP population haplotypes and case/control phenotypes to identify disease associated sites. TMARG takes the approach of inferring genealogical history (in the form of ancestral recombination graph or ARG) and then using the ARGs to map the trait.
- Linux/Windows with Cygwin
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Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms,
ournal of Computational Biology. September 2008, 15(7): 667-684.