TiQuant is a modular software tool for efficient quantification of biological tissues based on volume data obtained by biomedical image modalities. It includes a number of versatile image and volume processing chains tailored to the analysis of different tissue types which have been experimentally verified. TiQuant implements a novel method for the reconstruction of three-dimensional surfaces of biological systems, data that often cannot be obtained experimentally but which is of utmost importance for tissue modelling in systems biology.
INRIA / IZBI Joint Research Group
- Linux / WIndows /MacOsX
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TiQuant: Software for tissue analysis, quantification and surface reconstruction.
Friebel A, Neitsch J, Johann T, Hammad S, Hengstler JG, Drasdo D, Hoehme S.
Bioinformatics. 2015 Jun 3. pii: btv346.