tigre 1.22.0 / tigreBrowser 1.0.3 – Transcription Factor Inference through Gaussian process Reconstruction of Expression

tigre 1.22.0 / tigreBrowser 1.0.3

:: DESCRIPTION

tigre is an R/Bioconductor package for inference of transcription factor activity and ranking candidate target genes from gene expression time series.

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tigreBrowser is a web-based browser for tigre ranking results. It allows easy viewing, sorting and filtering of visualisations of models produced by tigre.

:: DEVELOPER

Antti Honkela

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / windows/ MacOsX
  • BioCOnductor
  • R package
  • Python

:: DOWNLOAD

 tigre / tigreBrowser 

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Apr 1;27(7):1026-7. doi: 10.1093/bioinformatics/btr057. Epub 2011 Feb 7.
tigre: Transcription factor inference through gaussian process reconstruction of expression for bioconductor.
Honkela A1, Gao P, Ropponen J, Rattray M, Lawrence ND.