Aug 202013
 

TEAK 20130207

:: DESCRIPTION

TEAK software suite is an open source GUI software consisting of two modules: Topology Enrichment Analysis frameworK (TEAK) and Query Structure Enrichment Analysis (QSEA). TEAK is used to find biologically activated KEGG subpathways given molecular profiling data whereas QSEA is used to perform hierarchical querying of the KEGG pathways.

::DEVELOPER

Dongxiao Zhu, Ph.D

:: SCREENSHOTS

TEAK

:: REQUIREMENTS

  • Windows/MacOsX
  • Matlab 

:: DOWNLOAD

 TEAK

:: MORE INFORMATION

Citation:

Judeh, T, Johnson, C, Kumar, A, Zhu, D (2013)
TEAK: Topological Enrichment Analysis frameworK for detecting activated biological subpathways.
Nucleic Acids Res. 2013 Feb 1;41(3):1425-37. , doi: 10.1093/nar/gks1299.

Judeh, T, Nguyen, T and Zhu, D. (2012).
QSEA for fuzzy subgraph querying of KEGG pathways.
in the proceedings of 2012 ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB’12

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