TargetPrediction performs all against all dynamic programming on two sets of sequences (miRNAs and mRNAs) in order to predict, for every miRNA in the set, its target mRNAs.
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Isana Veksler-Lublinsky, Yonat Shemer-Avni, Klara Kedem and Michal Ziv-Ukelson.
Gene bi-targeting by viral and human miRNAs.
BMC Bioinformatics 11:249, 2010.