TARGeT (Tree Analysis of Related Genes and Transposons) uses either a DNA or amino acid ‘seed’ query to: (i) automatically identify and retrieve gene family homologs from a genomic database, (ii) characterize gene structure and (iii) perform phylogenetic analysis. Due to its high speed, TARGeT is also able to characterize very large gene families, including transposable elements (TEs).
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Yujun Han, James M. Burnette III and Susan R. Wessler
TARGeT: a web-based pipeline for retrieving and characterizing gene and transposable element families from genomic sequences
Nucl. Acids Res. (2009) 37 (11): e78.