Mar 212013
 

TAPIR 1.1

:: DESCRIPTION

TAPIR is a web server designed for the prediction of plant microRNA targets. The server offers the possibility to search for plant miRNA targets using a fast and a precise algorithm. The precise option is much slower but guarantees to find less perfectly paired miRNA – target duplexes. Furthermore, the precise option allows the prediction of target mimics, which are characterized by a miRNA – target duplex having a large loop, making them undetectable by traditional tools.

::DEVELOPER

Eric Bonnet @ VIB / UGent

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux
  • Perl
  • Bioperl
  • ViennaRNA library + perl modules

:: DOWNLOAD

 TAPIR

:: MORE INFORMATION

Citation

Bonnet, E., He, Y., Billiau, K., Van de Peer, Y. (2010)
TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.
Bioinformatics 26, 1566-1568.

406 views

Sorry, the comment form is closed at this time.