tagSNPfinder – Mutilocus LD Measure and Tag SNP Selection

tagSNPfinder

:: DESCRIPTION

tagSNPfinder is a software of Cross entropy Monte Carlo methods for SNP selection. TagSNPFinder defined a novel multilocus LD measure ER with generalized mutual information. We also designed  a general scheme to select ‘tagging’ SNPs through  combining the association and diversity together. Currently TagSNPFinder have routines to select Tagging SNPs with exhaustive search forward, backward, and stepwise selection.

::DEVELOPER

Statistical Genetics and Bioinformatics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • MATLAB

:: DOWNLOAD

 tagSNPfinder

:: MORE INFORMATION

Citation

Liu, Z., Lin, S., Tan, M. (2006)
Genome-wide tagging SNPs with entropy-based Monte Carlo methods.
Journal of Computational Biology, 13, 1606-1614

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