ESTstat 1.0 – Web-based software for Statistical Analysis of EST library samples

ESTstat 1.0

:: DESCRIPTION

ESTstat implements the statistical algorithms of Wang et al. 2004a, Wang and Lindsay (2005) to provide an automated solution to quantitative analysis of EST (expressed sequence tag) data.

::DEVELOPER

Ji-Ping Wang at jzwang@northwestern.edu.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux / Mac OsX
  • Perl

:: DOWNLOAD

 ESTstat

:: MORE INFORMATION

Citation

Ji-Ping Z. Wang, Bruce G. Lindsay, James Leebens-Mack, Liying Cui, Kerr Wall, Webb C. Miller, Claude W. dePamphilis (2004a)
EST Clustering Error Evaluation and Correction.
Bioinformatics (2004) 20 (17): 2973-2984.

Ji-Ping Z. Wang, Bruce G. Lindsay, Liying Cui, Kerr Wall, Josh Marion, Jiaxuan Zhang, Claude W. dePamphilis (2004b)
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries
BMC Bioinformatics 2005, 6:300 doi:10.1186/1471-2105-6-300

Ji-Ping Z. Wang and Bruce G. Lindsay (2005)
A penalized nonparametric maximum likelihood approach to species richness estimation.
Journal of American Statistical Association. 100(471):942-959.