NGL Viewer 0.6 – Web Application for Molecular Visualization

NGL Viewer 0.6

:: DESCRIPTION

The NGL Viewer is a web application for the visualization of macromolecular structures. Large molecular complexes from common structural file-formats (e.g. PDB, mmCIF) are interactively displayed by fully adopting capabilities of modern web browsers, including WebGL. A graphical user interface allows easy access to a variety of molecular representations (e.g. ‘cartoon, spacefill, licorice’). Moreover, the viewer can be embedded in other web sites to provide custom visualizations.

::DEVELOPER

Alexander Rose <alexander.rose@weirdbyte.de> @ Institute of Medical Physics and Biophysics

:: SCREENSHOTS

NGLViewer

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

NGL Viewer

:: MORE INFORMATION

Citation
Nucleic Acids Res. 2015 Apr 29. pii: gkv402.
NGL Viewer: a web application for molecular visualization.
Rose AS, Hildebrand PW

Jflow 1.1 – A Workflow Management System for Web Applications

Jflow 1.1

:: DESCRIPTION

Jflow is a JavaScript based workflow management system, composed of Jquery plugins which can easily be embedded in any WEB application and a Python library providing all requested features to setup, run and monitor workflows.

::DEVELOPER

Jflow team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • JavaScript
  • Python

:: DOWNLOAD

 Jflow

:: MORE INFORMATION

Citation

Jflow: a workflow management system for web applications.
Mariette J, Escudié F, Bardou P, Nabihoudine I, Noirot C, Trotard MS, Gaspin C, Klopp C.
Bioinformatics. 2015 Oct 10. pii: btv589

YIMAA 20120802 – Interactive Yeast Image Analysis web application

YIMAA 20120802

:: DESCRIPTION

YIMAA is a web site for visualization of yeast image analysis results and also interactive viewing of raw and re-segmentation binary images.

::DEVELOPER

YIMAA team

:: SCREENSHOTS

yimaa

:: REQUIREMENTS

  • Linux
  • Web Server
  • Java

 YIMAA

:: MORE INFORMATION

Citation

Quantitative analysis of colony morphology in yeast.
Ruusuvuori P, Lin J, Scott AC, Tan Z, Sorsa S, Kallio A, Nykter M, Yli-Harja O, Shmulevich I, Dudley AM.
Biotechniques. 2014 Jan;56(1):18-27. doi: 10.2144/000114123.

BatchPrimer3 1.0 – High Throughput Web Application for PCR and Sequencing Primer Design

BatchPrimer3 1.0

:: DESCRIPTION

BatchPrimer3 is a comprehensive web primer design program using Primer3 core program as a major primer design engine to design different types of PCR primers and sequencing primers in a high-through manner. BatchPrimer3 allows users to design several types of primers including generic primers, hybridization oligos, SSR primers together with SSR detection, and SNP genotyping primers (including single-base extension primers, allele-specific primers, and tetra-primers for tetra-primer ARMS PCR), as well as DNA sequencing primers. A batch input of large number of sequences and a tab-delimited result output greatly facilitates rapid primer design and ordering process.

::DEVELOPER

Department of Plant Sciences, University of California

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Perl

:: DOWNLOAD

 BatchPrimer3

:: MORE INFORMATION

Citation

BatchPrimer3: a high throughput web application for PCR and sequencing primer design.
You FM, Huo N, Gu YQ, Luo MC, Ma Y, Hane D, Lazo GR, Dvorak J, Anderson OD.
BMC Bioinformatics. 2008 May 29;9:253.

PubArray 1.0.0 – Turn Analyzed Results of Microarray Experiment into Web Application

PubArray 1.0.0

:: DESCRIPTION

PubArray is a desktop application that allows you to turn the analyzed results of your microarray experiment into a web application which is accessible via your browser.

::DEVELOPER

The Churchill Group

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • java

:: DOWNLOAD

 PubArray

:: MORE INFORMATION