3V 1.3 – Volume Related Calculations

3V 1.3

:: DESCRIPTION

3V (Voss Volume Voxelator) is collection of program for the assessment of volumes in protein files.. These tools include methods for displaying the surface of macromolecules and extracting internal channels.

::DEVELOPER

Gerstein Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 3V

:: MORE INFORMATION

Citation:

Neil R. Voss and Mark Gerstein
3V: cavity, channel and cleft volume calculator and extractor
Nucleic Acids Res. 2010 July 1; 38(Web Server issue): W555–W562.

AtVol 1.2 – Atomic Volume Calculation

AtVol 1.2

:: DESCRIPTION

AtVol performs atomic volume calculations by separating each atom from neighboring atoms where their van der Waals spheres join and performing Monte Carlo integration to estimate the volume.

::DEVELOPER

Richardson Lab

:: SCREENSHOTS

Command Line

:: REQUIREMENTS

  • Linux/ MacOsX/SGI-irix/Sun-SPARC

:: DOWNLOAD

AtVol

:: MORE INFORMATION

AtVol is free software available under the terms of its own BSD-style license.