CRAVAT 4.0 – Cancer-related Analysis of Variants Toolkit

CRAVAT 4.0

:: DESCRIPTION

CRAVAT is a web server with simple interface where cancer-related analysis of variants are performed.CRAVAT currently employs three analysis tools, CHASM, SNVGet, and VEST.

::DEVELOPER

Karchin Lab

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

CRAVAT: cancer-related analysis of variants toolkit.
Douville C, Carter H, Kim R, Niknafs N, Diekhans M, Stenson PD, Cooper DN, Ryan M, Karchin R.
Bioinformatics. 2013 Mar 1;29(5):647-8. doi: 10.1093/bioinformatics/btt017. Epub 2013 Jan 16.

MRHMMs 2 – Multivariate Regression Hidden Markov Models and the variantS

MRHMMs 2

:: DESCRIPTION

MRHMMs accommodates a variety of HMMs that can be flexibly applied to many biological studies and beyond.

::DEVELOPER

MRHMMs team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX/ WIndows
  • C Compiler

:: DOWNLOAD

 MRHMMs

:: MORE INFORMATION

Citation:

Bioinformatics. 2014 Feb 27. [Epub ahead of print]
MRHMMs: Multivariate Regression Hidden Markov Models and the variantS.
Lee Y1, Ghosh D, Hardison RC, Zhang Y.