PathVar – Microarray Analysis of Pathway Expression Variance

PathVar

:: DESCRIPTION

PathVar is a new dedicated web application to analyze these data sources. The software ranks pathway-representing gene/protein sets in terms of the differences of the variance in the within-pathway expression levels across different biological conditions.

::DEVELOPER

PathVar team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Feb 1;28(3):446-7. doi: 10.1093/bioinformatics/btr656. Epub 2011 Nov 28.
PathVar: analysis of gene and protein expression variance in cellular pathways using microarray data.
Glaab E, Schneider R.

flowVS 1.4.2 – Variance Stabilization in Flow Cytometry

flowVS 1.4.2

:: DESCRIPTION

flowVS is a variance-stabilization algorithm that removes the mean-variance correlations from cell populations identified in each fluorescence channel.

::DEVELOPER

Ariful Azad <azadcse at gmail.com>

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R / BioConductor

:: DOWNLOAD

 flowVS

:: MORE INFORMATION

Citation

flowVS: channel-specific variance stabilization in flow cytometry.
Azad A, Rajwa B, Pothen A.
BMC Bioinformatics. 2016 Jul 28;17:291. doi: 10.1186/s12859-016-1083-9.

Cyber-TPlus – Analysis of Differential Gene Expression Based on Bayesian Estimation of Variance

Cyber-TPlus

:: DESCRIPTION

Cyber-TPlus is a differential analysis tool that uses Bayesian estimation of the variance of gene expression level for the small number of replicates. The method has more consistent comparing to the widely used tool cyber-t that successfully introduced Bayesian framework into differential analysis.

::DEVELOPER

Systems Biology of Gene Regulatory Elements

:: SCREENSHOTS

Cyber-TPlus

:: REQUIREMENTS

  • Windows / Linux / MacOsX
  •  java

:: DOWNLOAD

 Cyber-TPlus

:: MORE INFORMATION