SBGN-ED 1.6 – Editing, Translating and Validating of SBGN Maps

SBGN-ED 1.6

:: DESCRIPTION

SBGN-ED is a VANTED Add-on which allows to create and edit all three types of SBGN maps, that is Process Description, Entity Relationship and Activity Flow, to validate these maps according to the SBGN specifications, to translate maps from the KEGG and MetaCrop pathway databases into SBGN, and to export SBGN maps into several file and image formats.
SBGN (Systems Biology Graphical Notation) is an emerging standard for graphical representations of biochemical and cellular processes studied in systems biology.

::DEVELOPER

Life Science Informatics – Prof. Dr. Falk Schreiber

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 SBGN-ED

:: MORE INFORMATION

Citation

Tobias Czauderna, Christian Klukas and Falk Schreiber
Editing, Validating, and Translating of SBGN Maps
Bioinformatics (2010)doi: 10.1093/bioinformatics/btq40

svviz 1.4.0 – A Read Viewer for Validating Structural Variants

svviz 1.4.0

:: DESCRIPTION

svviz visualizes high-throughput sequencing data relevant to a structural variant.

::DEVELOPER

Noah Spies

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX
  • Python

:: DOWNLOAD

 svviz

:: MORE INFORMATION

Citation

svviz: a read viewer for validating structural variants.
Spies N, Zook JM, Salit M, Sidow A.
Bioinformatics. 2015 Aug 18. pii: btv478