ARTP 2.0.2 – Gene and Pathway p-values computed using the Adaptive Rank Truncated Product

ARTP 2.0.2

:: DESCRIPTION

ARTP (Adaptive Rank Truncated Product) is an R package for analyzing pre-defined genetic pathway based on a genetic association study.

::DEVELOPER

 DCEG

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows/MacOsX
  • R package

:: DOWNLOAD

 ARTP

:: MORE INFORMATION

Citation

Cancer Res. 2010 Jun 1;70(11):4453-9. doi: 10.1158/0008-5472.CAN-09-4502. Epub 2010 May 11.
Pathway analysis of breast cancer genome-wide association study highlights three pathways and one canonical signaling cascade.
Menashe I, Maeder D, Garcia-Closas M, Figueroa JD, Bhattacharjee S, Rotunno M, Kraft P, Hunter DJ, Chanock SJ, Rosenberg PS, Chatterjee N.

RTP – Calculate Significance of Truncated Products of P-values

RTP

:: DESCRIPTION

RTP: C code for calculating significance of truncated products of P-values

::DEVELOPER

Frank Dudbridge

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOS
  • C Compiler

:: DOWNLOAD

  RTP

:: MORE INFORMATION

Citation

Genet Epidemiol. 2003 Dec;25(4):360-6.
Rank truncated product of P-values, with application to genomewide association scans.
Dudbridge F, Koeleman BP.