TreeVis – A MATLAB-based tool for Tree Visualization

TreeVis

:: DESCRIPTION

TreeVis is a new visualization algorithm to generate clear two-dimensional layouts of complex tree structures.

::DEVELOPER

Peng Qiu

:: SCREENSHOTS

TreeVis

:: REQUIREMENTS

  • Windows
  • Matlab / R package

:: DOWNLOAD

 TreeVis

:: MORE INFORMATION

Citation

Peng Qiu, and Sylvia K. Plevritis,
TreeVis: A MATLAB-based Tool for Tree Visualization“,
Computer Methods and Programs in Biomedicine, 109(1):75-76, 2013.

Paloverde 1.1 – A 3-D Tree Visualization Tool

Paloverde 1.1

:: DESCRIPTION

Paloverde is a simple program to do three-D visualizations of moderately large phylogenies. Trees with between 100 and 2500 taxa seem to work best (more if subclades are defined by the user).

::DEVELOPER

Mike Sanderson’s Lab 

:: SCREENSHOTS

Paloverde

:: REQUIREMENTS

  • Linux / MacOsX
  • C Compiler

:: DOWNLOAD

 Paloverde

:: MORE INFORMATION

Citation

Bioinformatics. 2006 Apr 15;22(8):1004-6. Epub 2006 Feb 24.
Paloverde: an OpenGL 3D phylogeny browser.
Sanderson MJ.

TaxonTree 1.2 – Interactive Tree Visualization for Kingdom Animalia

TaxonTree 1.2

:: DESCRIPTION

TaxonTree combines dynamic query interfaces and zoomable graphics to visually accommodate highly interconnected data such as the Linnaean hierarchy for Kingdom Animalia . Because the structure of the data is visualized, the interface should be suitable both for biologists and for the general public. Names of organisms are essential to any biological database, including genomic databases, so a tool that allows effective searching and browsing of these names has wide application.

::DEVELOPER

Biodiversity Informatics Visualization TeamHuman-Computer Interaction Lab , University of Maryland

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

TaxonTree

:: MORE INFORMATION

Citation:

Lee, B., C.S. Parr, D. Campbell, and B. Bederson. 2004.
How Users Interact with Biodiversity Information Using TaxonTree.
Proceedings of Advanced Visual Interfaces (AVI 2004) pp. 320-327.