hapassoc 1.2-8 – Inference of Trait Associations with SNP Haplotypes and other attributes using the EM Algorithm

hapassoc 1.2-8

:: DESCRIPTION

The hapassoc R package implementing methods described in Burkett et al. (2004) for likelihood inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm.

::DEVELOPER

SFU Statistical Genetics working group

:: REQUIREMENTS

:: DOWNLOAD

 hapassoc

:: MORE INFORMATION

Citation

Burkett et al. (2004)
A note on inference of trait associations with SNP haplotypes and other attributes in generalized linear models.
Hum Hered. 2004;57(4):200-6.

CNVtools 1.62.0 – Robust CNV Case Control and Quantitative Trait Association

CNVtools 1.62.0

:: DESCRIPTION

CNVtools is an R package for performing robust case control and quantitative trait association analyses of Copy Number Variants.

::DEVELOPER

Chris Barnes

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R
  • BioConductor

:: DOWNLOAD

  CNVtools 

:: MORE INFORMATION

Citation

A robust statistical method for case-control association testing with Copy Number Variation.
Barnes C, Plagnol V, Fitzgerald T, Redon R, Marchini J, Clayton D, Hurles ME.
Nature Genetics, 2008 Oct;40(10):1245-52

iXora – Exact Haplotype Inferencing and Trait Association

iXora

:: DESCRIPTION

iXora  (Identifying crossovers and recombining alleles) is a framework for inferring haplotypes from genotyped population data, and for associating observed phenotypes with the inferred haplotypes

::DEVELOPER

iXora Team

:: SCREENSHOTS

iXora

:: REQUIREMENTS

  • Linux / Windows

:: DOWNLOAD

 iXora 

:: MORE INFORMATION

Citation

iXora: exact haplotype inferencing and trait association.
Utro F, Haiminen N, Livingstone D 3rd, Cornejo OE, Royaert S, Schnell RJ, Motamayor JC, Kuhn DN, Parida L.
BMC Genet. 2013 Jun 6;14:48. doi: 10.1186/1471-2156-14-48.