rtracklayer 1.30.4 – R interface to Genome Browsers and their Annotation Tracks

rtracklayer 1.30.4

:: DESCRIPTION

The rtracklayer package supports the integration of existing genome browsers with experimental data analyses performed in R.

:: DEVELOPER

Michael Lawrence <michafla@gene.com>, Vincent J Carey, Robert Gentleman

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Mac OsX/Windows
  • R package
  • BioConductor

:: DOWNLOAD

 rtracklayer

:: MORE INFORMATION

Citation

Bioinformatics. 2009 Jul 15;25(14):1841-2. doi: 10.1093/bioinformatics/btp328..
rtracklayer: an R package for interfacing with genome browsers.
Lawrence M, Gentleman R, Carey V.

AnCorr – Genome Track Analyzer

AnCorr

:: DESCRIPTION

AnCorr is the set of tools for genome-wide study of genomic features and their correlations.The tools is designed to compare genome tracks by robust method with their attribution relative to DNA strands.

::DEVELOPER

AnCorr team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

Genome-wide study of correlations between genomic features and their relationship with the regulation of gene expression.
Kravatsky YV, Chechetkin VR, Tchurikov NA, Kravatskaya GI.
DNA Res. 2015 Feb;22(1):109-19. doi: 10.1093/dnares/dsu044.

AxonTracker 1.0 – Track and Label Axon Structures

AxonTracker 1.0

:: DESCRIPTION

AxonTracker is useful to semi-automatically track and label axon structures from the motor axon connectome datasets. It is a parameter-free software, and hence can be used over a broad range of datasets.The software is designed with ease of use in mind. The interface is simple and includes a 3D visualization of the dataset along with a real-time overlay of the tracking results. A 2D view of the dataset is also provided in order to interact with the software. Three orthogonal views are provided with a provision for back-tracking the results. Points can be added/deleted from the tracking results to provide guidance in case of an error.

::DEVELOPER

TMHRI Center for Bioengineering and Informatics

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

AxonTracker

:: MORE INFORMATION

The download and usage is free for academic and non-commercial purposes and if used in research and publications, it should be referenced.