TRaCE 0.1 – Transitive Reduction and Closure Ensemble

TRaCE 0.1

:: DESCRIPTION

TRaCE is a new framework and algorithms for the ensemble inference of GRNs (gene regulatory networks).

:: DEVELOPER

Chemical and Biological Systems Engineering Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / windows/ MacOsX
  • MatLab

:: DOWNLOAD

 TRaCE

:: MORE INFORMATION

Citation

Ud-Dean, SMM., and Gunawan, R.
Ensemble Inference and Inferability of Gene Regulatory Networks.
PLoS ONE, 9(8), e103812 (2014)

Trace2PS 2.72 / FSA2PS – Converting Trace and Fsa files to PostScript format

Trace2PS 2.72 / FSA2PS

:: DESCRIPTION

Trace2PS and FSA2PS provide easy to handle software toolkits that allow to convert sequence and fragment analysis raw data files to PostScript images, respectively.

::DEVELOPER

J. Krawczyk, A. Goesmann, R. Nolte, M. Werber, B. Weisshaar

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Trace2PS / FSA2PS

:: MORE INFORMATION

Citation

Krawczyk, Justina and Goesmann, Alexander and Nolte, Ralf and Werber, Martin and Weisshaar, Bernd
Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format,
Source Code Biol Med. 2009 Jul 21;4:4. doi: 10.1186/1751-0473-4-4.

FinchTV 1.5 – Trace Viewer

FinchTV 1.5

:: DESCRIPTION

FinchTV is the popular way to view DNA sequence traces. FinchTV started as the only chromatogram viewer that can display an entire trace in a scalable multi-pane view. And it leads the way with raw data views, BLAST searching and the ability to reverse complement sequences and traces.

::DEVELOPER

Geospiza, Inc.

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Mac OsX /  Linux

:: DOWNLOAD

FinchTV

:: MORE INFORMATION

trace2seq 1.0.1 – Process Capillary Sequencing Traces

trace2seq 1.0.1

:: DESCRIPTION

trace2seq process raw sequencing chromatograph trace files into quality-checked sequences. trace2seq is a PERL script, designed to be run friom the command line.

::DEVELOPER

The Blaxter Lab at The Institute of Evolutionary Biology University of Edinburgh

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

trace2seq

:: MORE INFORMATION

trace2dbEST 3.0.1 – Turn Traces into Expressed Sequence Tags

trace2dbEST 3.0.1

:: DESCRIPTION

trace2dbEST process raw sequenceing chromatograph trace files from EST projects into quality-checked sequences, ready for submission to dbEST. trace2dbEST guides you through the creation of all the necessary files for submission of ESTs to dbEST.

::DEVELOPER

The Blaxter Lab at The Institute of Evolutionary Biology University of Edinburgh

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

trace2dbEST

:: MORE INFORMATION

Citation:

J Parkinson, A Anthony, J Wasmuth, R Schmid, A Hedley, M Blaxter: PartiGene—constructing partial genomes, Bioinformatics 2004 20(9):1398-404).