16S classifier – Fast and Accurate Taxonomic Classification of 16S rRNA Sequences

16S classifier

:: DESCRIPTION

16S Classifier‘ is a Random Forest based tool which is developed to carry out fast, efficient and accurate taxonomic classification of 16S rRNA sequences. It has the unique ability to classify small Hypervariable Regions of 16S rRNA.

::DEVELOPER

MetaBioSys laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • R

:: DOWNLOAD

 16S classifier

:: MORE INFORMATION

Citation

16S classifier: a tool for fast and accurate taxonomic classification of 16S rRNA hypervariable regions in metagenomic datasets.
Chaudhary N, Sharma AK, Agarwal P, Gupta A, Sharma VK.
PLoS One. 2015 Feb 3;10(2):e0116106. doi: 10.1371/journal.pone.0116106.

ColorPhylo – Display Taxonomic Classifications

ColorPhylo

:: DESCRIPTION

ColorPhylo is an automatic coloring tool that display the taxonomic relationships between species.

::DEVELOPER

Sylvain Lespinats

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / MacOsX / Linux
  • MatLab

:: DOWNLOAD

 ColorPhylo

:: MORE INFORMATION

Citation

Evol Bioinform Online. 2011;7:257-70. doi: 10.4137/EBO.S7565. Epub 2011 Nov 13.
ColorPhylo: A Color Code to Accurately Display Taxonomic Classifications.
Lespinats S, Fertil B.

SPANNER 1.0.0 – Homology-based Taxonomic Classification of Protein Sequences

SPANNER 1.0.0

:: DESCRIPTION

SPANNER (Simularity Profile ANNotatER) extends LCA to perform supervised homology-based taxonomic classification of metagenomic fragments.

::DEVELOPER

Beiko lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /MacOsX
  • C++ Compiler
  • Python

:: DOWNLOAD

 SPANNER

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Aug 1;29(15):1858-64. doi: 10.1093/bioinformatics/btt313.
SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles.
Porter MS, Beiko RG.