NGSrich 0.7.8 – Target Enrichment Performance for Next-generation Sequencing

NGSrich 0.7.8

:: DESCRIPTION

NGSrich is a tool for researchers concerned with target enrichment issues in next-generation sequencing. It evaluates the target enrichment performance of target regions given in BED format and outputs summary statistics, visualizations, and some additional files giving details on the analysis.

::DEVELOPER

NGSrich team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows
  • JRE

:: DOWNLOAD

 NGSrich

:: MORE INFORMATION

Citation

Assessing the enrichment performance in targeted resequencing experiments.
Frommolt P, Abdallah AT, Altmüller J, Motameny S, Thiele H, Becker C, Stemshorn K, Fischer M, Freilinger T, Nürnberg P.
Hum Mutat. 2012 Apr;33(4):635-41. doi: 10.1002/humu.22036

TEQC 3.8.0 – Quality Assessment of Target Enrichment Experiments

TEQC 3.8.0

:: DESCRIPTION

TEQC is an R/Bioconductor package for quality assessment of target enrichment experiments.

::DEVELOPER

Bioinformatics Core @ CRG

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX/Windows
  • R package
  • BioConductor

:: DOWNLOAD

 TEQC

:: MORE INFORMATION

Citation

Bioinformatics. 2011 May 1;27(9):1316-7. doi: 10.1093/bioinformatics/btr122.
TEQC: an R package for quality control in target capture experiments.
Hummel M, Bonnin S, Lowy E, Roma G.

miTEA – miRNA Target Enrichment Analysis

miTEA

:: DESCRIPTION

miTEA is a tool for identifying and visualizing enriched miRNA targets in ranked lists of genes.

::DEVELOPER

Laboratory of Computational Biology at the Technion.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

miRNA target enrichment analysis reveals directly active miRNAs in health and disease.
Steinfeld I, Navon R, Ach R, Yakhini Z.
Nucleic Acids Res. 2013 Feb 1;41(3):e45.