EDSSI – Engineered DNA Sequence Syntax Inspector

EDSSI

:: DESCRIPTION

EDSSI is an online bioinformatics pipeline that checks for syntax errors through three steps. First, ORF prediction in input DNA sequences is done by GeneMark; next, homologous sequences are retrieved by BLAST; and finally, syntax errors in the protein sequence are predicted by using the SIFT algorithm.

:: DEVELOPER

Anderson Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

 EDSSI

:: MORE INFORMATION

Citation

ACS Synth Biol. 2014 Feb 21;3(2):91-6. doi: 10.1021/sb400176e. Epub 2014 Jan 3.
Engineered DNA sequence syntax inspector.
Hsiau TH1, Anderson JC.

Vim Nexus syntax highlighting – Nexus syntax highlighting files for the Vim editor

Vim Nexus syntax highlighting

:: DESCRIPTION

Vim Nexus syntax highlighting is Nexus syntax highlighting files for the Vim editor . Recognizes many/most of the PAUP/MrBayes commands.

::DEVELOPER

Johan Nylander 

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux/ MacOsX

:: DOWNLOAD

 Vim Nexus syntax highlighting

:: MORE INFORMATION

RNAML 1.1.2 – Syntax for Exchanging RNA Information

RNAML 1.1.2

:: DESCRIPTION

RNAML is a standard syntax for exchanging RNA information.This RNAML syntax allows for the storage and the exchange of information about RNA sequence and secondary and tertiary structures. The syntax permits the description of higher level information about the data including, but not restricted to, base pairs, base triples, and pseudoknots

::DEVELOPER

 Laboratoire de Bioinformatique Théorique

:: REQUIREMENTS

  • Linux / Mac OsX/Windows
  • Java 

:: DOWNLOAD

 RNAML

:: MORE INFORMATION

Citation

A. Waugh et al.
RNAML: a standard syntax for exchanging RNA information.
RNA. 2002 Jun;8(6):707-17.