EnTrans-Chlo – Transductive Learning for Protein Subchloroplast Localization

EnTrans-Chlo

:: DESCRIPTION

EnTrans-Chlo is an efficient multi-label predictor which is based on a transductive model for predicting single- and multi-location chloroplast proteins. EnTrans-Chlo represents using a TRANSductive-learning based algorithm to exploit ENsemble features of both sequence-based and evolutionary-based information to predictor protein subCHLOroplast localization.

::DEVELOPER

Dr. Man-Wai Mak

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

IEEE/ACM Trans Comput Biol Bioinform. 2016 Feb 8.
Transductive Learning for Multi-Label Protein Subchloroplast Localization Prediction.
Wan S, Mak MW, Kung SY.

MultiP-SChlo – Multi-Label Protein Subchloroplast Localization Prediction

MultiP-SChlo

:: DESCRIPTION

MultiP-SChlo is a web server of multi-label protein subchloroplast localization prediction with Chou’s pseudo amino acid composition and a novel multi-label classifier

::DEVELOPER

MultiP-SChlo team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

MultiP-SChlo: multi-label protein subchloroplast localization prediction with Chou’s pseudo amino acid composition and a novel multi-label classifier.
Wang X, Zhang W, Zhang Q, Li GZ.
Bioinformatics. 2015 Apr 20. pii: btv212.

ChloPred – Prediction of Subchloroplast Locations of Proteins

ChloPred

:: DESCRIPTION

ChloPred is a sequence-based predictor for identifying subchloroplast location of proteins

::DEVELOPER

LinDing Group, Center of Bioinformatics, University of Electronic Science and Technology of China.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Hao Lin, Chen Ding, Lu-Feng Yuan, Wei Chen, Hui Ding, Zi-Qiang Li, Feng-Biao Guo, Jian Huang, Ni-Ni Rao. (2013)
Predicting subchloroplast locations of proteins based on the general form of Chou’s pseudo amino acid composition: approached from optimal tripeptide composition.
International Journal of Biomathematics, 6(2): 1350003.

SubChlo 2.0 – Predicting Protein Subchloroplast Locations

SubChlo 2.0

:: DESCRIPTION

SubChlo is the first computational system for predicting protein subchloroplast locations from its primary sequence.

::DEVELOPER

Bioinformatics Division / Center for Synthetic and Systems Biology, TNLIST

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/MacOsX
  • Perl / .net 2.0

:: DOWNLOAD

 SubChlo

:: MORE INFORMATION

Citation

J Theor Biol. 2009 Nov 21;261(2):330-5. doi: 10.1016/j.jtbi.2009.08.004. Epub 2009 Aug 11.
SubChlo: predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic K-nearest neighbor (ET-KNN) algorithm.
Du P, Cao S, Li Y.