SV-Bay – Detection of Structural Variants in Cancer Mate-pair and Paired-end data

SV-Bay

:: DESCRIPTION

SV-Bay is a computational method to detect structural variants from whole genome sequencing mate-pair or paired-end data using a probabilistic Bayesian approach.

::DEVELOPER

Institut Curie, Bioinformatics department

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • Python

:: DOWNLOAD

 SV-Bay

:: MORE INFORMATION

Citation

SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read map-pability.
Iakovishina D, Janoueix-Lerosey I, Barillot E, Regnier M, Boeva V.
Bioinformatics. 2016 Jan 6. pii: btv751.

BreakSeq 1.3 – Structural Variants Annotation and Identification pipeline

BreakSeq 1.3

:: DESCRIPTION

BreakSeq is a pipeline for annotation, classification and analysis of Structural Variants (SVs) at single nucleotide resolution

::DEVELOPER

Gerstein Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 BreakSeq

:: MORE INFORMATION

Citation:

Nat Biotechnol. 2010 Jan;28(1):47-55. Epub 2009 Dec 27.
Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library.
Lam HY, Mu XJ, Stütz AM, Tanzer A, Cayting PD, Snyder M, Kim PM, Korbel JO, Gerstein MB.