STRIKE 1.2 – Sequence Alignment Scoring Tool

STRIKE 1.2

:: DESCRIPTION

STRIKE (Single sTRucture Induced Evaluation) is a program to evaluate protein multiple sequence alignments using a single protein structure.

::DEVELOPER

Notredame’s Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

  STRIKE

:: MORE INFORMATION

Citation:

Bioinformatics. 2011 Dec 15;27(24):3385-91. doi: 10.1093/bioinformatics/btr587. Epub 2011 Oct 28.
STRIKE: evaluation of protein MSAs using a single 3D structure.
Kemena C, Taly JF, Kleinjung J, Notredame C.

Strike – Protein-protein Interaction Classification tool

Strike

:: DESCRIPTION

Strike (String Kernel) is a program which classifies protein-protein interaction into “interacting” and “non-interacting” sets based solely on amino acid sequence information. The classification is made by applying the string kernel technique. Two proteins are classified “interacting” if they contain similar subsequences of amino acids.

::DEVELOPER

Nazar Zaki , Bioinformatics Laboratory, UAE University.

:: SCREENSHOTS

N/A

::REQUIREMENTS

:: DOWNLOAD

  Strike

:: MORE INFORMATION

Citation

Adv Exp Med Biol. 2011;696:263-70. doi: 10.1007/978-1-4419-7046-6_26.
Strike: a protein-protein interaction classification approach.
Zaki N, El-Hajj W, Kamel HM, Sibai F.