ThunderSTORM 1.3 – ImageJ plugin for PALM and STORM data analysis and super-resolution imaging

ThunderSTORM 1.3

:: DESCRIPTION

ThunderSTORM is an open-source, interactive and modular plug-in for ImageJ designed for automated processing, analysis and visualization of data acquired by single-molecule localization microscopy methods such as photo-activated localization microscopy and stochastic optical reconstruction microscopy.

::DEVELOPER

Institute of Cellular Biology and PathologyFirst Faculty of MedicineCharles University in Prague, Czech Republic.

:: SCREENSHOTS

ThunderSTORM

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java
  • ImageJ

:: DOWNLOAD

 ThunderSTORM

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Apr 25. pii: btu202. [Epub ahead of print]
ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging.
Ovesný M, Křížek P, Borkovec J, Svindrych Z, Hagen GM.

SToRM 0.0099 – Seed-based Read Mapping tool for SOLiD or Illumina sequencing data

SToRM 0.0099

:: DESCRIPTION

SToRM is a software tool primarily proposed for mapping SOLiD reads or Illumina reads to a reference genome. It was based on seeding techniques adapted to the statistical characteristics of the reads: the default seeds are for example designed (using the Iedera software) to comply with the properties of the SOLiD color encoding, or Illumina more classical encoding as well as the observed reading error distribution along the read.

::DEVELOPER

Bonsai Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  •  Linux / MacOsX
  • C Compiler

:: DOWNLOAD

 SToRM

:: MORE INFORMATION

Citation

Noé, L. and Gîrdea,. and Kucherov, G.:
Designing efficient spaced seeds for SOLiD read mapping
Advances in Bioinformatics, Volume 2010 2010

STORM 1.01 – Protein Analyses of BLAST, FASTA, Pfam and ProtParam

STORM 1.01

:: DESCRIPTION

STORM (Systematic Tailored Orf-data Retrieval & Management) combines protein analyses of BLAST, FASTA, Pfam and ProtParam on a batch-file of protein sequences. It subsequently summarizes and organizes the output in an Access database format.More specifically, STORM extracts protein sequences after ORF prediction and subsequently performs an automatic analysis for each of the proteins. This analysis consists of web-based similarity searches (BLASTp and FASTA) as well as Pfam predictions and Protparam calculations of protein physicochemical properties.

::DEVELOPER

Laboratory of Gene Technology, Katholieke Universiteit Leuven

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows
  • Microsoft Access

:: DOWNLOAD

STORM

:: MORE INFORMATION

Citation

Lavigne, R., Sun, W.D. and Volckaert, G.
STORM towards protein function: Systematic Tailored ORF-data Retrieval and Managment.
Applied Bioinformatics (2003) 2(3): 177-179