MR-MSPOLYGRAPH / MSPolygraph 1.61

:: DESCRIPTION

MR-MSPOLYGRAPH is a MapReduce based implementation for parallelizing peptide identification from mass spectrometry data

MSPolygraph is an open source hybrid database and spectral library MS/MS search engine that runs in either serial or parallel modes. MSPolygraph examines the ions in MS/MS spectra to identify likely matching candidate peptides from a reference database of protein sequences (.Fasta file). MSPolygraph also supports searching a spectral library (collection of annotated MS/MS spectra).

::DEVELOPER

Ananth Kalyanaraman

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux
• C Compiler

:: DOWNLOAD

 MR-MSPOLYGRAPH / MSPolygraph

:: MORE INFORMATION

Citation

A. Kalyanaraman, W.R. Cannon, B. Latt, D.J. Baxter (2011).
MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification.
Bioinformatics (2011) 27 (21): 3072-3073. doi: 10.1093/bioinformatics/btr523.

Cannon W.R., K.H. Jarman, B.M. Webb-Robertson, D.J. Baxter, C.S. Oehmen, K.D. Jarman, A. Heredia-Langner, G.A. Anderson, and K.J. Auberry. 2005.
“Comparison of probability and likelihood models for peptide identification from tandem mass spectrometry data”,
J. Proteome Research, 4(5): 1687-169