Simulate
- InVitroSimII – Simulate Barlow-Hall method of in vitro Evolution using StrataGene’s GeneMorph II kit
- qps 1.0 – Simulate Populations evolving on a two-dimensional Continuum
- Coancestry 1.0.1.1 – Simulate, Estimate and Analyse Relatedness and Inbreeding Coefficients
- SIMLD – Simulate Linkage Disequilibrium
- SIMULATE – Simulate Genotypes in Family Members
- TranscriptSimulator 0.7 – Simulate Transcriptome Next-gen Reads, including 454 and Illumina
- Sampling 0.5 – Simulate Haplotypes in Non-Equilibrium Subdivided Populations
- HAPGEN 2.2.0 – Simulate Case Control Datasets at SNP Markers
- yasimSBML 1.0.1 – Simulate Metabolic Network depending on the Flux Distribution
- Seq-Gen 1.3.3 – Simulate the Evolution of Sequences along a Phylogeny
- Skeledyne 3 – Simulate Cytoskeletal Dynamics
- eNelator – Cytoscape plugin to Simulate Network Attack
- quantiNEMO 1.0.4 – Simulate Quantitative Traits with Explicit Genetic Architecture
- PSPE – Simulate Evolution of Non-coding DNA Sequences
- Fatsim – Simulate the Effect of extracting/not extracting lipids on the outcome of stable Isotope Mixing Models
- SIMULATOR 1.0 – Simulate DNA and Protein datasets with well-defined Insertion-deletion dynamics
- HGT – Simulate and Estimate Horizontal Gene Transfer events
- SPIP 1.0 – Simulate Pedigrees and Genetic data in Age-structured Population
- SPLATCHE 2.01 – Simulate Genetic Diversity taking into Account Environmental Heterogeneity
- AQUASPLATCHE 1.0 – Simulate Genetic Diversity based on a Realistic Vectorized Environment
- MULTISIM 1.1 – Simulate Founder Effects
- invertFREGENE – Simulate Sequence Level data with Inversions
- simNGS 1.6 – Simulate Observations from Illumina NGS machines
- NetDyn 1.0 – Simulate Gene Network Growing
- TWINSIM – Simulate Twin-nuclear Families in which QTLs and Linked Markers are Segregating
- GenoQuickSim 20100309 – Simulates Genotypic data using Coalescent Methods
- EasyPop 2.0.1 – Simulate Population Genetics Datasets
- ChromoSeg 1.0 – Simulate and plot Ancestral Recombination Graphs
- CoaSim 4.2.0 – Simulating Coalescent Process
- SelSim 2.1 – Simulate Population Genetic Data with Selection and Recombination
- CoaCC 1.0.1 – Simulate Case-control Study using Coalescent Framework
- Phylogen 1.1 – Simulate Phylogenies
- Virtlab 1.3 – Simulate Molecular Biology Laboratory
- Biogenesis 0.8 – Simulate Evolution of Unicellular Organisms
- Bugs 2.0 – Simulate Bacteria-like Organism Growth
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