AntiMPmod – Modified Antimicrobial Peptides Prediction Server

AntiMPmod

:: DESCRIPTION

AntiMPmod is an in silico method, which is developed to predict efficient modified antimicrobial peptides (ModAMP).

::DEVELOPER

AntiMPmod team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Prediction of Antimicrobial Potential of a Chemically Modified Peptide From Its Tertiary Structure.
Agrawal P, Raghava GPS.
Front Microbiol. 2018 Oct 26;9:2551. doi: 10.3389/fmicb.2018.02551.

PROCLASS – Protein Structure Classification Server

PROCLASS

:: DESCRIPTION

 PROCLASS allows to predict the class of protein from its amino acid sequence. It predict weather protein belong to class Alpha or Beta or Alpha+Beta or Alpha/Beta.

::DEVELOPER

Dr. G P S Raghava,

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Raghava, G P S (1999)
Proclass: A computer program for predicting the protein structural classes.
J. Biosciences 24, 176.

APSSP2 – Advanced Protein Secondary Structure Prediction Server

APSSP2

:: DESCRIPTION

APSSP2 allows to predict the secondary structure of protein’s from their amino acid sequence.

::DEVELOPER

Dr. G P S Raghava

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Raghava, G. P. S. (2002)
APSSP2 : A combination method for protein secondary structure prediction based on neural network and example based learning.
CASP5. A-132.

FTG – Fast Fourier Transform based GENE Prediction Server

FTG

:: DESCRIPTION

FTG is aweb server for locating probable protein coding region in nucleotide sequence using fourier tranform approach

::DEVELOPER

FTG Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Issac, B., Singh, H., Kaur, H. and Raghava, G.P.S. (2002)
Locating probable genes using fourier transform approach.
Bioinformatics 18:196

ProtMod – Protein Modeling Server

ProtMod

:: DESCRIPTION

ProtMod is a protein modeling server. Its task is to predicts 3-dimensional structures of proteins based on their sequences. Instead of generating only one model for a given protein, ProtMod produces a list of protein models and orders them by different model evaluation scores.

::DEVELOPER

Godzik Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser
:: DOWNLOAD

 NO

:: MORE INFORMATION

AIDA – Ab Initio Domain Assembly Server

AIDA

:: DESCRIPTION

AIDA is a tool that can identify domains in multi-domain proteins and then predict their 3D structures and relative spatial arrangements.

::DEVELOPER

Godzik Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
:: DOWNLOAD

 AIDA

:: MORE INFORMATION

Citation:

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W308-13. doi: 10.1093/nar/gku369. Epub 2014 May 15.
AIDA: ab initio domain assembly server.
Xu D, Jaroszewski L, Li Z, Godzik A

bSiteFinder – Protein-binding Sites Prediction Server

bSiteFinder

:: DESCRIPTION

bSiteFinder is a web server for indentifying protein-binding sites.

::DEVELOPER

bSiteFinder team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation:

bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming.
Gao J, Zhang Q, Liu M, Zhu L, Wu D, Cao Z, Zhu R.
J Cheminform. 2016 Jul 11;8:38. doi: 10.1186/s13321-016-0149-z.

FALCON@home – High-throughput Protein Structure Prediction server

FALCON@home

:: DESCRIPTION

The design of FALCON@home is based on the observation that a structural template, especially for remote homologous proteins, consists of conserved regions interweaved with highly-variable regions.

::DEVELOPER

Bioinformatics Lab, Institute of Computing Technology Chinese Academy of Sciences

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition.
Wang C, Zhang H, Zheng WM, Xu D, Zhu J, Wang B, Ning K, Sun S, Li SC, Bu D.
Bioinformatics. 2015 Oct 10. pii: btv581.

JPred 4 – Protein Secondary Structure Prediction Server

JPred 4

:: DESCRIPTION

JPred is a Protein Secondary Structure Prediction server. JPred incorporates the Jnet algorithm in order to make more accurate predictions. In addition to protein secondary structure JPred also makes predictions on Solvent Accessibility and Coiled-coil regions (Lupas method).

:: DEVELOPER

The Barton Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

Nucleic Acids Res. 2015 Apr 16. pii: gkv332.
JPred4: a protein secondary structure prediction server.
Drozdetskiy A, Cole C, Procter J, Barton GJ.

RNAex – RNA Secondary Structure Prediction Server

RNAex

:: DESCRIPTION

RNAex is an RNA secondary structure prediction enhanced by high-throughput experimental data

::DEVELOPER

Lu Lab, School of Life Sciences, Tsinghua University, China

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data.
Wu Y, Qu R, Huang Y, Shi B, Liu M, Li Y, Lu ZJ.
Nucleic Acids Res. 2016 May 2. pii: gkw362.