MS4 0.2 – Multi Scale Selector of Sequence Signatures

MS4 0.2

:: DESCRIPTION

MS4 is a method that selects among all the segments of similarity detected by the N-local decoding algorithm (Didier et al., 2007) those on which a classification of unaligned set of sequences is based.

::DEVELOPER

Claudine Devauchelle (devauchelle@genopole.cnrs.fr) @ Laboratoire de Mathématiques et Modélisation d’Évry

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/ MacOsX
  • Python

:: DOWNLOAD

MS4

:: MORE INFORMATION

Citation

Eduardo Corel et al.
MS4 – Multi-Scale Selector of Sequence Signatures: An alignment-free method for classification of biological sequences
BMC Bioinformatics 2010, 11:406 doi:10.1186/1471-2105-11-406

d2Meta – Comparison of Metagenomic Samples Using Sequence Signatures

d2Meta

:: DESCRIPTION

d2Meta is intended to implement a program for alignment-free comparison of metagenomic samples of NGS data using  and .

::DEVELOPER

Fengzhu Sun

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX / Windows
  • C++ Compiler

:: DOWNLOAD

 d2Meta

:: MORE INFORMATION

Citation

BMC Genomics. 2012 Dec 27;13:730. doi: 10.1186/1471-2164-13-730.
Comparison of metagenomic samples using sequence signatures.
Jiang B, Song K, Ren J, Deng M, Sun F, Zhang X.