NPACT 2.3.1 – N-Profile Analysis Computational Tool

NPACT 2.3.1

:: DESCRIPTION

NPACT is a computational and graphical representation tool for gene identification and sequence annotation. NPACT identifies sequence segments of any length with statistically-significant 3-base compositional periodicities and associated with ORF structures .

::DEVELOPER

University of Florida Genetics Institute

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX

:: DOWNLOAD

 NPACT

:: MORE INFORMATION

Citation

Bioinformatics. 2015 Jun 4. pii: btv339.
Quantitative frame analysis and the annotation of GC-rich (and other) prokaryotic genomes. An application to Anaeromyxobacter dehalogenans.
Oden S, Brocchieri L

PDBpaint 20111209 – Tag Protein Structures with Sequence Annotations

PDBpaint 20111209

:: DESCRIPTION

PDBpaint is a simple tool that displays protein sequence features gathered from bioinformatics resources on top of protein structures, which are displayed in an interactive window (using the Jmol Java viewer). PDBpaint can be used either with existing protein structures or with novel structures provided by the user.

::DEVELOPER

Computational Biology and Data Mining Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 PDBpaint

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Sep 15;27(18):2605-6. Epub 2011 Jul 14.
PDBpaint, a visualization webservice to tag protein structures with sequence annotations.
Fournier D, Andrade-Navarro MA.

ASAP II 2.03 – Automated Sequence Annotation Pipeline

ASAP II 2.03

:: DESCRIPTION

ASAP is designed to ease routine investigation of new functional annotations on unknown sequences, such as expressed sequence tags (ESTs), through querying of web-accessible databases.

::DEVELOPER

FCCC Bioinformatics, Fox Chase Cancer Center

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • http server
  • Perl
  • MySQL

:: DOWNLOAD

 ASAP II

:: MORE INFORMATION

Citation:

Andrew Kossenkov, Frank J. Manion, Eugene Korotkov , Thomas D. Moloshok and Michael F. Ochs (2003)
ASAP: automated sequence annotation pipeline for web-based updating of sequence information with a local dynamic database.
Bioinformatics (2003) 19 (5): 675-676.doi: 10.1093/bioinformatics/btg056

Sma3s – Sequence Massive Annotation

Sma3s

:: DESCRIPTION

 Sma3s (Sequence Massive Annotation With 3 modules) is a bioinformatics tool for the massive annotation of sequences coming from a ESTs or Unigene libraries as well as coding nucleotide or amino acid genomic sequences.

::DEVELOPER

Bioinformatics and Information Technologies LaboratoryUniversity of Malaga

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ linux /MacOsX
  • Blast
  • Perl
  • Bioperl

:: DOWNLOAD

  Sma3s

:: MORE INFORMATION