SeqSaw is a package for mapping of spliced reads and unbiased detection of novel splice junctions from RNA-seq data.
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Biochem Biophys Res Commun. 2011 Jun 3;409(2):299-303. Epub 2011 May 7.
Observations on novel splice junctions from RNA sequencing data.
Wang L, Wang X, Wang X, Liang Y, Zhang X.