CellAging – Study Segregation and Partitioning in Division in Cell Lineages of Escherichia coli

CellAging

:: DESCRIPTION

CellAging is a tool designed to automatically extract information on the segregation of aggregates to the cell poles and their partitioning in division and on cellular vitality from temporal images of E. coli cells, obtained by parallel brightfield and fluorescence microscopy.

::DEVELOPER

Andre S. Ribeiro

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • MatLab

:: DOWNLOAD

 CellAging

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Jul 1;29(13):1708-9. doi: 10.1093/bioinformatics/btt194. Epub 2013 Apr 23.
CellAging: a tool to study segregation and partitioning in division in cell lineages of Escherichia coli.
Antti Hakkinen, Muthukrishnan AB, Mora A, Fonseca JM, Ribeiro AS.

ParMSpindle 1.0 – Simulation of the ParM mediated Segregation of Bacterial Plasmids

ParMSpindle 1.0

:: DESCRIPTION

ParMSpindle is a 3D, force-based simulation of the ParM mediated segregation of bacterial plasmids, tracking the biochemical state of each monomer with experimentally determined filament dynamics

::DEVELOPER

The Center for Cell Dynamics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java 

:: DOWNLOAD

   ParMSpindle

:: MORE INFORMATION