Secondary Structure
- RNAstructure 5.5 – Prediction & Analysis of RNA Secondary Structure
- Circles 0.1.1 – Analysis of RNA Secondary Structure
- Vienna RNA Package 2.1.1 – RNA Secondary Structure Prediction & Comparison
- KNetFold 1.4.4b – RNA secondary structure prediction
- MPGAfold / MPGAfold Visualizer – Massively Parallel Genetic Algorithm that Predicts RNA Secondary Structure
- NetSurfP 1.0b – Protein Surface Accessibility & Secondary Structure Predictions
- Evolving SCFGs 2.0 – RNA Secondary Structure Prediction
- SSP – Secondary Structure Propensity
- mRNA optimiser 1.0 – Redesign mRNA Sequences to Optimise the Secondary Structure
- Continuum Secondary Structure Predictor
- transFold – Super-secondary Structure Prediction of Transmembrane β-barrel proteins
- RNAbor – Compute Structural Neighbors of an RNA Secondary Structure
- VARNA 3-9 – Java pplet for Drawing the Secondary Structure of RNA
- AlphaPred – Prediction of Alpha-turns in Proteins using Multiple Alignment and Secondary Structure Information
- GammaPred – Prediction of Gamma-turns in Proteins using Multiple Alignment and Secondary Structure Information
- APSSP2 – Advanced Protein Secondary Structure Prediction Server
- RNA draw 1.1b2 – RNA Secondary Structure Calculation & Analysis
- loopDloop 2.07b – Draw RNA Secondary Structures
- CRNPRED 1.1 – Predict Secondary Structures of Protein
- RNAprofile 2.2 – Secondary structure motif discovery in RNA sequences
- RNABOB 2.2 – Fast Pattern Searching for RNA Secondary Structures
- SStructView 1.2.2 – RNA Secondary Structure Viewing Java Applet
- ScrewFit 1.0.1beta – Characterization of Protein Secondary Structures
- STRIDE – Secondary Structure Assignment from known Atomic Coordinates of Proteins
- MSACompro 1.2.0 – Protein Multiple Sequence Alignment using predicted Secondary Structure
- PSpro 2.0 – Predict Secondary Structure, Solvent Accessibility, and Residue-residue Contacts
- Context Fold 1.0 – RNA Secondary Structure Prediction tool
- RNAMute – RNA Secondary Structure Mutation Analysis Tool
- RNAwolf 0.3.2 / MC-Fold-DP – RNA Secondary Structure Prediction.
- prof_ss – Profile-profile Comparison algorithm using Primary and Secondary Structure Information
- PALSSE 20090521 – Predictive Assignment of Linear Secondary Structure Elements
- Palingol 1.3 – Programming Language in the Description of Nucleic Acids Secondary Structures
- MASS 1.0 – Multiple Protein Structure Alignment by Secondary Structures
- PSIPRED 3.3 – Accurate Protein Secondary Structure Prediction
- SSEA 1.1 – Secondary Structure Element Alignment
- RNAmutants 1.1.0 – Exploring the Effects of Mutations on the Secondary Structure of RNAs
- RNACluster 1.0 – RNA Secondary Structure Comparison and Clustering
- MUPRED – Protein Secondary Structure Prediction
- ESSA – Analyse RNA Secondary Structure
- SIMPA 96 – Predict Secondary Structure of Proteins
- RSpredict – Predict Secondary Structures of multiple RNA Sequence Alignments
- RSfold – Predict Secondary Structures of Single RNA Sequence
- MEMERIS 1.0 – MEME in Rna’s Including Secondary Structures
- HotKnots 2.0 – Predict Secondary Structures of RNA with or without Pseudoknots
- Rchange – Compute Energy Changes of RNA Secondary Structures
- Rentropy – Compute Entropy of RNA Secondary Structures
- jViz.Rna 2.0 – Visual Comparison of RNA Secondary Structure
- SSalign – Secondary Structure Determination in DNA/RNA Sequences
- RNA – RNA Consensus Secondary Structure Prediction Software
- CONTRAfold 2.02 – RNA Secondary Structure Prediction
- RNA-DV 1.0 – Design & Visualization Tool for RNA Secondary Structure
- RNAv – Search Genomes for RNA Secondary Structure Variation
- RNAfamily – Java Viewer for RNA Secondary Structures
- Carnac 0.98 – Predict Secondary Structure for a set of Homologous RNA Sequences
- Rnall 2.0 – RNA Local Secondary Structure Prediction
- XRNA 1.2.0b – Creation, Annotation & Display of RNA Secondary Structure Diagrams
- RnaViz 2.0 – Secondary Structure Drawings of RNA Molecules
- HMMSTR 20091212 – Protein Secondary Structure Prediction
- RNAMovies 2.0.4 – Visualization of RNA Secondary Structure
- ALIDOT 2.0.5 – Detect Conserved Secondary Structure Motifs
- RNAView – Generates 2-dimensional Displays of RNA/DNA Secondary Structures
- assp 1.2 – Assess Protein Secondary Structure Prediction Accuracy
- comRNA 1.80 – Common RNA Secondary Structure Predictor
Recent Comments