VarSim 0.8.5 – A Simulation Validation Framework for Secondary Analysis in High-throughput Genome Sequencing

VarSim 0.8.5

:: DESCRIPTION

VarSim is a high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

::DEVELOPER

Roche Sequencing Solutions

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • windows/Linux/MacOsX
  • Java
  • Python

:: DOWNLOAD

 VarSim

:: MORE INFORMATION

Citation

VarSim: A high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications.
Mu JC, Mohiyuddin M, Li J, Asadi NB, Gerstein MB, Abyzov A, Wong WH, Lam HY.
Bioinformatics. 2014 Dec 17. pii: btu828.

BALSA 2.0 – GPU Accelerated Integrated WGS and WES Secondary Analysis

BALSA 2.0

:: DESCRIPTION

BALSA is an integrated solution for the secondary analysis of next generation sequencing data; it exploits the computational power of GPU and an intricate memory management to give a fast and accurate analysis.

::DEVELOPER

L3 Bioinformatics Limited

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • GPU

:: DOWNLOAD

 BALSA

:: MORE INFORMATION

Citation

BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU.
Luo R, Wong YL, Law WC, Lee LK, Cheung J, Liu CM, Lam TW.
PeerJ. 2014 Jun 3;2:e421. doi: 10.7717/peerj.421.