BlindCall 1.0 – Ultra-fast Base-calling of Second-generation Sequencing data by Blind Deconvolution

BlindCall 1.0

:: DESCRIPTION

BlindCall is a simple and ultra-fast non-probabilistic base-calling method for Illumina high-throughput sequencing data based on blind deconvolution.

::DEVELOPER

Héctor Corrada Bravo

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • MatLab

:: DOWNLOAD

 BlindCall

:: MORE INFORMATION

Citation:

Bioinformatics. 2014 May 1;30(9):1214-9. doi: 10.1093/bioinformatics/btu010. Epub 2014 Jan 9.
BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution.
Ye C1, Hsiao C, Corrada Bravo H.

AnnoJ genome browser – View data tracks from Second Generation Sequencing platform

AnnoJ genome browser

:: DESCRIPTION

Genome browser is a visualization tool that can be used to view data tracks from second generation sequencing platform. AnnoJ genome browser is a web 2.0 technology based program, which provides quick response and fast readering speed. Here we provide some programs and documents that can be used to set up and configure AnnoJ genome browser on your own computer.

::DEVELOPER

Wei Wang’s group

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux
  • GCC
  • Perl
  • Apache
  • PHP
  • Oracle Berkeley DB

:: DOWNLOAD

 AnnoJ genome browser

:: MORE INFORMATION