AdaPatch 1.0 – Searche for Dense and Spatially Distinct Clusters of sites

AdaPatch 1.0

:: DESCRIPTION

AdaPatch searches for dense and spatially distinct clusters of sites under positive selection on the surface of proteins.

::DEVELOPER

Algorithmic Bioinformatics, Heinrich-Heine-Universität Düsseldorf

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

  AdaPatch

:: MORE INFORMATION

Citation

Christina Tusche, Lars Steinbrück and Alice C. McHardy
Detecting Patches of Protein Sites of Influenza A Viruses under Positive Selection
Mol Biol Evol (2012) 29 (8): 2063-2071.

RTanalyzer – Searche for Retro-transposition Elements in the Human Genome

RTanalyzer

:: DESCRIPTION

RTAnalyzer looks for a target site duplication, a polyA in 3′ and an endonuclease cleavage site in 5′ to calculate an overall score of retrotransposition.RTanalyzer will be useful for indepth analysis of non-autonomous retrotransposons in sequenced mammals to help us understand retrotransosition in our evolutionary tree.

::DEVELOPER

RiboClub

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 RTanalyzer

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W269-74. Epub 2007 Jun 1.
RTAnalyzer: a web application for finding new retrotransposons and detecting L1 retrotransposition signatures.
Lucier JF, Perreault J, No?l JF, Boire G, Perreault JP.