SEABED – Small molEcule Activity scanner

SEABED

:: DESCRIPTION

SEABED (Small molEcule Activity scanner weB servicE-baseD) is a web-server that automates different tools for virtual screening, including classical QSAR, with a large variety of machine learning tools, and docking, with many tools for target and binding characterization.

::DEVELOPER

SEABED team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

SEABED: Small molEcule Activity scanner weB servicE-baseD.
Fenollosa C, Otón M, Andrio P, Cortés J, Orozco M, Go?i JR.
Bioinformatics. 2014 Oct 27. pii: btu709.

SAROTUP 2.0 – Target-Unrelated Peptides Scanners

SAROTUP 2.0

:: DESCRIPTION

SAROTUP is a suite of web tools that can scan, report and exclude possible target-unrelated peptides from the noisy experiment results of phage display.

::DEVELOPER

HLAB: Huang’s LAB

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

J Biomed Biotechnol. 2010;2010:101932. doi: 10.1155/2010/101932. Epub 2010 Mar 21.
SAROTUP: scanner and reporter of target-unrelated peptides.
Huang J1, Ru B, Li S, Lin H, Guo FB.

PPS 1.0 – PTMs Peptide Scanner

PPS 1.0

:: DESCRIPTION

PPS (PTMs Peptide Scanner) is a novel software to reveal known or highly potential PTM sites in eukaryotic proteins.

::DEVELOPER

The CUCKOO Workgroup

:: SCREENSHOTS

:: REQUIREMENTS

  • WIndows / Linux / MacOsX
  • Java

:: DOWNLOAD

  PPS

:: MORE INFORMATION

Citation

PPS 1.0: A computational software for revealing known or highly potential post-translational modification sites in eukaryotes.
Jian Ren, Xinjiao Gao, Changjiang Jin, Xuebiao Yao, Longping Wen and Yu Xue.
Submitted.

 

Tagger 1.3 – Genome/Transcriptome-wide Tag Scanner

Tagger 1.3

:: DESCRIPTION

Tagger is a tool which allows searching fixed-sequence tags (or sequence branches) against entire genomes or mRNA reference sequence databases.

TanScan Online

::DEVELOPER

Computational Cancer Genomics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Tagger

:: MORE INFORMATION

Citation

Indexing Strategies for Rapid Searches of Short Words in Genome Sequences
Iseli C, Ambrosini G, Bucher P, and Jongeneel CV.
PLoS ONE. 2007; 2(6): e579.

QuantiScan 3.0 – Densitometry using Ordinary Office Scanners

QuantiScan 3.0

:: DESCRIPTION

QuantiScan for Windows has similar functionality to sophisticated densitometers but at a fraction of the cost. It is able to analyze a wide variety of material including polyacrylamide and agarose gels, autoradiograms, TLC plates, etc. The program will accept images for analysis directly from any TWAIN compliant scanner as well as most BMP, JPG or uncompressed TIF files. For laned gels of reasonable quality, the analysis is highly automated, allowing extremely high throughput of data. Almost any type of image can be analyzed with the manual modes of Quantiscan. Images can be pre-processed in a variety of ways within QuantiScan including crop, flip, invert, scroll and zoom.

::DEVELOPER

Biosoft

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

QuantiScan

:: MORE INFORMATION

Ordering