ms 20140908 – Generating Samples under Neutral Models of Genetic Variation

ms 20140908

:: DESCRIPTION

ms is a program to generate samples under a variety of neutral models. The purpose of this program is to allow one to investigate the statistical properties of such samples, to evaluate estimators or statistical tests, and generally to aid in the interpretation of polymorphism data sets.

::DEVELOPER

Richard R. Hudson

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler

:: DOWNLOAD

 ms

:: MORE INFORMATION

Citation:

Richard R. Hudson (2002).
Generating samples under a Wright-Fisher neutral model of genetic variation.
Bioinformatics 18: 337-338.

simuGWAS – Simulation of samples for Genome-Wide Association Studies

simuGWAS

:: DESCRIPTION

simuGWAS is a forward-time simulator that simulates realistic samples for genome-wide association studies.

::DEVELOPER

Bo Peng, Ph.D.

:: SCREENSHOTS

simuGWAS

:: REQUIREMENTS

  • Windows  / Linux / MacOsX
  • Python

:: DOWNLOAD

 simuGWAS

:: MORE INFORMATION

Citation

Peng B, Amos CI. (2010)
Forward-time simulation of realistic samples for genome-wide association studies
BMC Bioinformatics. 2010 Sep 1;11:442. doi: 10.1186/1471-2105-11-442.

PATHMATRIX 1.1 – GIS tool to Compute Effective Distances among Samples

PATHMATRIX 1.1

:: DESCRIPTION

PATHMATRIX is an extension to the GIS software ArcView 3.x. It computes matrices of effective distances, based on a least-cost path algorithm, among a set of sample locations (points) or zones (polygons)

::DEVELOPER

Computational and Molecular Population Genetics Lab, University of Bern

:: SCREENSHOTS

PATHMATRIX

:: REQUIREMENTS

  • Windows
  • ArcView

:: DOWNLOAD

 PATHMATRIX

:: MORE INFORMATION

Citation

Ray N. (2005)
PATHMATRIX: a GIS tool to compute effective distances among samples,
Molecular Ecology Notes, 5: 177-180