Pysam 0.8.2.1 – Python module for Reading and Manipulating Sam files

Pysam 0.8.2.1

:: DESCRIPTION

Pysam is a python module for reading and manipulating Sam files.

::DEVELOPER

Computational Genomics: Analysis and Training (GCAT)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Python
:: DOWNLOAD

 Pysam

:: MORE INFORMATION

AgileSamFileMerger 20120105 – Combines two or more ordered SAM files to create a Single Ordered file

AgileSamFileMerger 20120105

:: DESCRIPTION

AgileSamFileMerger reads the sequence entries in two or more ordered *.sam files and combines all the entries in the original files into a single *.sam file.

::DEVELOPER

Leeds Institute of Molecular Medicine

:: SCREENSHOTS

AgileSamFileMerger

:: REQUIREMENTS

  • Windows
  • Microsoft .NET framework version 2.0 

:: DOWNLOAD

  AgileSamFileMerger

:: MORE INFORMATION

AgileGenotyper 20130204 – SNP Genotyping File data from SAM files containing Exome Sequence data

AgileGenotyper 20130204

:: DESCRIPTION

AgileGenotyper will create a pseudo-microarray SNP genotyping file from an ordered SAM file containing exon sequence data. The file will contain the genotype data at over 0.5 million SNP sites previously identified by the 1000 Genomes project. Such a file can then be used as a data source for a mapping program designed for analyzing Affymetrix microarray SNP data.

::DEVELOPER

Leeds Institute of Molecular Medicine

:: SCREENSHOTS

AgileGenotyper

:: REQUIREMENTS

  • Windows
  • Microsoft .NET framework version 2.0 

:: DOWNLOAD

 AgileGenotyper

:: MORE INFORMATION