SAGE 2 – String Graph Assembly of GEnomes

SAGE 2

:: DESCRIPTION

SAGE is a new string-overlap graph-based de novo genome assembler.

::DEVELOPER

LUCIAN ILIE

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 SAGE

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014 Sep 15;15:302. doi: 10.1186/1471-2105-15-302.
SAGE: String-overlap Assembly of GEnomes.
Ilie L1, Haider B, Molnar M, Solis-Oba R.

SAGExplore – Map SAGE tags against Genomic Annotation

SAGExplore

:: DESCRIPTION

SAGExplore is a server for the mapping of SAGE tags against a genomic annotation.

::DEVELOPER

Francisco Melo Ledermann

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W163-8. Epub 2007 Jul 10.
SAGExplore: a web server for unambiguous tag mapping in serial analysis of gene expression oriented to gene discovery and annotation.
Norambuena T, Malig R, Melo F.

SAGE 6.3 – Statistical Analysis for Genetic Epidemiology

SAGE 6.3

:: DESCRIPTION

SAGE (Statistical Analysis for Genetic Epidemiology) is free but licensed software package containing programs for use in the genetic analysis of family, pedigree and individual data.

::DEVELOPER

Department of Epidemiology and Biostatistics, Case Western Reserve University

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux

:: DOWNLOAD

 SAGE

:: MORE INFORMATION

DE-SAGE – Analyze SAGE Library data

DE-SAGE

:: DESCRIPTION

DE-SAGE analyzes SAGE library data using a Bayesian hierachical and mixture modeling approach and RJMCMC computational algorithms.

::DEVELOPER

Statistical Genetics and Bioinformatics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • MATLAB

:: DOWNLOAD

 DE-SAGE

:: MORE INFORMATION

Citation

Wang, Z., Lin, S., Popesco, M., and Rotter, A. (2006)
Modeling and Analysis of Multi-library, Multi-group SAGE Data with Application to a Study of Mouse Cerebellum.
Biometrics, 63, 777-786.

CIST – Analysis of Gene Expression data Generated using SAGE

CIST

:: DESCRIPTION

CIST (Confidence Intervals for SAGE Tags )is a Windows program for the analysis of gene expression data generated using SAGE (Serial Analysis of Gene Expression).

::DEVELOPER

Mark P. Miller

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 CIST

:: MORE INFORMATION