p3d 0.4.3 – Python module for Structural Bioinformatics

p3d 0.4.3

:: DESCRIPTION

p3d is an object oriented Python module that adds a simple yet powerful interface to the Python interpreter to process and analyse three dimensional protein structure files (PDB files).

::DEVELOPER

CELLULAR AND MOLECULAR FUNCTIONS OF REACTIVE OXYGEN SPECIES

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOSX
  • Python

:: DOWNLOAD

  p3d

:: MORE INFORMATION

Citation

Christian Fufezan and Michael Specht
p3d – Python module for structural bioinformatics
BMC Bioinformatics 2009, 10:258 doi:10.1186/1471-2105-10-258

pymzML – Python module to Parse mzML data based on cElementTree

pymzML

:: DESCRIPTION

pymzML is an extension to Python that offers

  • easy access to mass spectrometry (MS) data that allows the rapid development of tools,
  • a very fast parser for mzML data, the standard in mass spectrometry data format
  • a set of functions to compare or handle spectra

::DEVELOPER

CELLULAR AND MOLECULAR FUNCTIONS OF REACTIVE OXYGEN SPECIES

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOSX
  • Python

:: DOWNLOAD

 pymzML

:: MORE INFORMATION

Citation

Bald, T., Barth, J., Niehues, A., Specht, M., Hippler, M., and Fufezan, C. (2012)
pymzML – Python module for high throughput bioinformatics on mass spectrometry data,
Bioinformatics, doi: 10.1093/bioinformatics/bts066

PyNISTPL – Python module that Interfaces to the NIST MS Search Engine libraries

PyNISTPL

:: DESCRIPTION

PyNISTPL is a python module that interfaces to the NIST MS Search Engine libraries to provide easy to use command-line searching and construction of peptide spectrum libraries.

::DEVELOPER

Edwards Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Python

:: DOWNLOAD

 PyNISTPL

:: MORE INFORMATION