PseAAC / PseAAC-Builder 3.0 / PseAAC-General – Generating Pseudo Amino Acid Composition

PseAAC / PseAAC-Builder 3.0 / PseAAC-General

:: DESCRIPTION

PseAAC is an algorithm that could convert a protein sequence into a digital vector that could be processed by pattern recognition algorithms. The design of PseAAC incorporated the sequence order information to improve the conventional amino acid compositions. The application of pseudo amino acid composition is very common, including almost every branch of computational proteomics.

PseAAC-Builder (PseAAC-General) is a cross-platform stand-alone program for generating various special Chou’s pseudo-amino acid compositions.

::DEVELOPER

PseAAC team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows with Cygwin

:: DOWNLOAD

 PseAAC-Builder 

:: MORE INFORMATION

Citation:

Hong-Bin Shen and Kuo-Chen Chou.
PseAAC: a flexible web-server for generating various kinds of protein pseudo amino acid composition.
Analytical Biochemistry, 2008, 373: 386-388.

Anal Biochem. 2012 Jun 15;425(2):117-9. doi: 10.1016/j.ab.2012.03.015. Epub 2012 Mar 27.
PseAAC-Builder: a cross-platform stand-alone program for generating various special Chou’s pseudo-amino acid compositions.
Du P1, Wang X, Xu C, Gao Y.

Pufeng Du, Shuwang Gu, Yasen Jiao.
PseAAC-General: Fast building various modes of general form of Chou’s pseudo-amino acid composition for large-scale protein datasets.
International Journal of Molecular Sciences 15 (2014) pp.3495-3506

PseAAC – Generating Pseudo Amino Acid Composition

PseAAC

:: DESCRIPTION

PseAAC is a web-server, by which users can generate various kinds of PseAA composition to best fit their need.

::DEVELOPER

Computational Systems Biology Group, Shanghai Jiao Tong University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

PseAAC: a flexible web server for generating various kinds of protein pseudo amino acid composition.
Shen HB, Chou KC.
Anal Biochem. 2008 Feb 15;373(2):386-8. Epub 2007 Oct 13.

pSuc-Lys – Predict Lysine Succinylation sites in Proteins with PseAAC and Ensemble Random Forest Approach

pSuc-Lys

:: DESCRIPTION

The web-server pSuc-Lys used to predict the lysine succinylation in protein.

::DEVELOPER

JCI BioInfo Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

pSuc-Lys: Predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach.
Jia J, Liu Z, Xiao X, Liu B, Chou KC.
J Theor Biol. 2016 Jan 22. pii: S0022-5193(16)00053-9. doi: 10.1016/j.jtbi.2016.01.020

iCDI-PseFpt – Identify the Channel-drug Interaction in Cellular Networking with PseAAC and Molecular Fingerprints

iCDI-PseFpt

:: DESCRIPTION

The webserver iCDI-PseFpt is an independent predictor using Fuzzy K-Nearest Neighbor algorithm, used to predict ion channel-drug interactions. It can be used to identify a pair as Ion channel-drug pair or non-Ion channel drug pair according to the sequence of protein and the molecular fingerprint of drug.

::DEVELOPER

JCI BioInfo Lab

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

iCDI-PseFpt: identify the channel-drug interaction in cellular networking with PseAAC and molecular fingerprints.
Xiao X, Min JL, Wang P, Chou KC.
J Theor Biol. 2013 Nov 21;337:71-9. doi: 10.1016/j.jtbi.2013.08.013.