Protein Structure
- Concoord 2.1.2 – Protein Structure Generation from Distance Constraint
- TM-score 20121217 – Calculate Similarity of Topologies of two Protein Structures
- QCS – Quality Control Score For Quality Assessment of Protein Structure Prediction
- ExonVisualiser – Exon Identification & Visualization in Protein Structures
- MaDCaT – Protein Structure Search tool
- Dali / DaliLite 3.3 – Structural Alignments between two Protein Structures
- Voroprot 0.7.6.7 – Explore Geomeric Features of Protein Structure
- FUGUE 20090924 – Protein Structure Prediction using Remote Homology Detection
- POLYVIEW-2D / POLYVIEW-3D / POLYVIEW-MM – Protein Structure Annotation using Sequence Profiles / Structures / Motions
- Vorometric – Integrated Search and Alignment of Protein Structures using Voronoi Contacts
- Pcons – Protein Structure Prediction Meta Server
- ANOLEA 2.4.2-2 – Assess the Quality of a 3D Protein Structure
- PROCLASS – Protein Structure Classification Server
- MODELLER 9.11 – Comparative Protein Structure Modeling
- BCL 2.4.0 – Protein Structure Determination from sparse Experimental data
- Helix Packing Pair – Calculation of Helix Packing Angles in Protein Structures
- TOPS / Tops editor – Topology Of Protein Structure
- PROTEUS 2.0 – Universal Protein Structure Prediction Server
- ProSMoS – Protein Structure Motif Search
- PDBpaint 20111209 – Tag Protein Structures with Sequence Annotations
- RAPTOR 4.5 – Protein Structure Modeling
- MASS 1.0 – Multiple Protein Structure Alignment by Secondary Structures
- MultiProt 1.0 – Multiple Protein Structure Alignment
- FlexProt – Pairwise Alignment of Flexible Protein Structures
- TriangleMatch – Pairwise Protein Structure Alignment based on Ca atoms
- GOAP – Protein Structure Prediction
- PROTARCH – Predict Protein Structure
- Jackal 1.5 – Protein Structure Modeling Package
- PROCHECK 3.5.4 – Check Stereochemical Quality of Protein Structures
- BnP 1.02 – Protein Structure-determination package
- TAP 1.1 – Protein Structure Validation
- WHAT IF 8.0 – Protein Structure Analysis program
- PROSPECT 2.0 – Threading-based Protein Structure Prediction System
- DomainParser 2 – Protein Structure Domain Partition
- Bhageerath 1.0 – Energy Based Protein Structure Prediction
- Graphlet kernel 1.01 – Annotate Functional Residues in Protein Structures
- RW 1.0 – Protein Structure Modeling and Structure Decoy Recognition
- SPICKER 20101229 – Cluster Protein Structures for Near-native Model Selection
- ModRefiner 20111024 – High-resolution Protein Structure Refinement
- I-TASSER 1.1 – Protein Structure & Function Predictions
- ModPipe 2.2.0 – Calculate Protein Structure Model
- YAKUSA – Scan Structural database with Query Protein Structure
- NQ-Flipper 2.7 – Validate Asparagine and Glutamine Side-chain Amide Rotamers in Protein Structures
- ProSa 2003 – Protein Structure Research Tool
- QuickPDB 20021101 – Java Applet for quickly viewing PROTEIN PDB Structure
- RDC-PANDA 1.0 – NMR NOE Assignment & Protein Structure Determination
- NOC 3.01 – Molecular Explorer for Protein Structure Visualization
- ProteinScope 1.0.5 – 3D Protein Structure Viewer
- Voronoia 1.0 – Analyse Packing of Protein Structures
- TASSER-Lite 1.0 – Protein Structure Modeling tool
- SuperMimic – Fit Peptide Mimetics into Protein Structures
- OVOP 1.0 – View Generation for Protein Structures
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