UnderlyingFilter – Filtering Degenerate Motifs with Application to Protein Sequence Analysis

UnderlyingFilter

:: DESCRIPTION

UnderlyingFilter is a software of filtering degenerate motifs to protein sequence analysis

::DEVELOPER

Matteo Comin

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Java

:: DOWNLOAD

 UnderlyingFilter

:: MORE INFORMATION

Citation

M. Comin, D. Verzotto,
Filtering Degenerate Motifs with Application to Protein Sequence Analysis“,
Algorithms 6, no. 2: pp. 352-370.

PredictProtein 2013 – Protein Sequence Analysis, Prediction of Structural and Functional Features

PredictProtein 2013

:: DESCRIPTION

PredictProtein integrates feature prediction for secondary structure, solvent accessibility, transmembrane helices, globular regions, coiled-coil regions, structural switch regions, B-values, disorder regions, intra-residue contacts, protein-protein and protein-DNA binding sites, sub-cellular localization, domain boundaries, beta-barrels, cysteine bonds, metal binding sites and disulphide bridges. Listed below is a comprehensive list of methods and databases currently incorporated into the server.

::DEVELOPER

Rost Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 PredictProtein

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2014 May 5
PredictProtein–an open resource for online prediction of protein structural and functional features.
Yachdav G1, Kloppmann E, Kajan L, Hecht M, Goldberg T, Hamp T,  nigschmid P, Schafferhans A, Roos M, Bernhofer M, Richter L, Ashkenazy H, Punta M, Schlessinger A, Bromberg Y, Schneider R, Vriend G, Sander C, Ben-Tal N, Rost AB.

NPS@ 20131114 – Interactive Web server dedicated to Protein Sequence Analysis

NPS@ 20131114

:: DESCRIPTION

NPS@ (Network Protein Sequence @nalysis) is an interactive Web server dedicated to protein sequence analysis and available for the biologist community

::DEVELOPER

NPS@ team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

NPS@: Network Protein Sequence Analysis
Trends Biochem Sci. 2000 Mar;25(3):147-50.
Combet C., Blanchet C., Geourjon C. and Deléage G.

MESSA – MEta Server for Protein Sequence Analysis

MESSA

:: DESCRIPTION

MESSA is a meta sever that gathers predictions of local sequence features, spatial structure, function, homologous proteins, protein families and protein domains of a given protein sequence.

::DEVELOPER

Grishin Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Cong Q, Grishin NV. (2012)
MESSA: MEta Server for Sequence Analysis“.
BMC Biology 10(1): 82 PMID: 23031578