Protein Sequence
- Gibbs Motif Sampler 3.10 – Identify Motifs, Conserved Regions, in DNA or Protein Sequences
- PISCES 20130411 – Protein Sequence Culling Server
- seqsee 1.6 – Protein Sequence Analyzer
- ANTHEPROT 6.3.1 – Protein Sequence Analysis
- Protein Sequence Motif Extractor 1.0.4752 – Look for the specified Motif in each Protein Sequence
- PepAligner 1.1.4034 – Align Protein Sequence
- FastaFileComparer 1.2.4786 – Compares Protein Sequences from two different Fasta files
- Protein Coverage Summarizer 1.3.4798 – Determine Percent of Residues in Protein Sequence
- tantan 13 – Find Cryptic Repeats in DNA, RNA, and Protein Sequences.
- PSIVER – Prediction of Protein-protein Interaction Sites in Protein Sequences
- K-Pax – Bayesian unsupervised Classification of Protein Sequences
- DLocalMotif – Discover Local Motifs in Protein Sequences
- Epitopia – Detection of Immunogenic Regions in Protein Sequences
- PSAweb – Analysis of Protein Sequence and Multiple Alignment
- pGraph / psgraph 2.0 – Parallel Construction of large-scale Protein Sequence Homology Graphs
- GlobPlot / GlobPipe 2.3 – Explore Disorder or Globularity in Protein Sequences
- ELM / iELM – Investigation of Functional Sites in Protein Sequences with Eukaryotic Linear Motif database
- AnDom – Assign Structual Domains to Protein Sequences
- CAPS 1.0 – Coevolution Analysis using Protein Sequences
- BAR+ – Functional and Structural Annotation of Protein sequences
- dasty 3.0.0.9 – Visualize Protein Sequence Feature Information using DAS
- RADAR 1.1.5 – Rapid Automatic Detection and Alignment of Repeats in protein sequences
- REPPER – Detect Regions with Short Gapless REPeats in Protein Sequences
- mpiCUDA-BLASTP 1.0 – Accelerate BLASTP for Scanning Protein Sequence databases on GPU clusters
- SAPS/SSPA 20110801 – Statistical Analysis of Protein Sequences & Significant Segment Pair Alignment
- PTMPred – Predict Post-transcriptional Modification sites from Protein sequences
- CKSAAP-Palm 20100528 – Predict Palmitoylation Sites from Protein Sequences
- 2ZIP – Prediction of Leucine Zipper Domain from the Protein Sequence
- OMiMa – Identify Functional Motifs in DNA or Protein Sequences
- DISpro 1.0 – Prediction of Disordered Regions from Protein Sequences
- ProteinEvaluator 1.0.0 – Protein Sequence Prediction Evaluator
- FANN-GO – Predict Gene Ontology terms for a given protein sequence
- MUMmer 3.23 – Alignment of Large-scale DNA & Protein Sequences
- doublet 1.0 – Incorporate Patterns of Dipeptide Covariation to Align Protein Sequences
- CS-PSeq-Gen 1.0 – Simulation of Protein Sequences under Constraints
- CRC64 2006 – Improved 64-bit Cyclic Redundancy Check for Protein Sequences
- Wise 2.2.0 – Compare Protein Sequence to Genomic DNA Sequence
- Pratt 2.1 – Find Flexible Patterns in Unaligned Protein Sequences
- PexSPAM 1.2 – Protein Sequence Feature Extraction
- ORFer 1.3.2.2 – Retrieval of Protein Sequences and Open Reading Frames from GenBank
- APSC 1.0 – Convert Protein Sequence File Format
- Alignment Benchmark – Collection of Protein Sequence Alignment Benchmarks
- HMMER 3.0 – Protein Sequence Homology Search
- NetCTL 1.2a – Predict CTL Epitopes in Protein Sequence
- SCANPS 2.3.11 – Protein Sequence Scanning Package
- ModView 0.903 – Visualization of Multiple Protein Sequences & Structures
- DASher 1.3.4 – Protein Sequence Client for DAS
- SPICE 0.9 – Protein Sequences, Structures & Annotations Browser
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