SeCaPr v1.1.15 – SEquence CApture PRocessor

SeCaPr v1.1.15

:: DESCRIPTION

SeCaPr is a computational pipeline for processing Illumina sequence capture data

::DEVELOPER

Antonelli Lab

:: SCREENSHOTS

N/a

:: REQUIREMENTS

  • Linux /  MacOsX
  • Python

:: DOWNLOAD

SeCaPr

:: MORE INFORMATION

Citation

PeerJ. 2018 Jul 13;6:e5175. doi: 10.7717/peerj.5175. eCollection 2018.
SECAPR-a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments.
Andermann T, Cano á, Zizka A, Bacon C, Antonelli A

Cromwell 1.0 – The New Model Processor for Mass Spectrometry Data

Cromwell 1.0

:: DESCRIPTION

Cromwell is an implementation of our algorithms for low-level processing of mass spectrometry proteomics data. Cromwell represents our third attempt (at least) to find a method to process spectra that both works quickly and achieves reasonably good results.

::DEVELOPER

Kevin R. Coombes

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Matlab

:: DOWNLOAD

 Cromwell

:: MORE INFORMATION

Citation

Cancer Inform. 2005;1:41-52.
Understanding the characteristics of mass spectrometry data through the use of simulation.
Coombes KR, Koomen JM, Baggerly KA, Morris JS, Kobayashi R.