Predict
- N-score – Predict Nucleosome Positions from DNA Sequence information
- SplamiR – Predicting miRNAs in Plants
- MPGAfold / MPGAfold Visualizer – Massively Parallel Genetic Algorithm that Predicts RNA Secondary Structure
- NRPSpredictor2 20111113 – Predict NRPS Adenylation Domain Specificity
- Precise – Predict Regulatory Cis-acting Elements
- TFBSs 1.0 – Predict Transcription Factor Binding Sites
- MiRmat – Predict mature microRNA from pri-microRNA
- Predikin – Predict Substrate Specificity of Protein Kinases
- HARBP 1.0 – Predicting Binding Activity of influenza virus Hemagglutinin(HA) to human and avian Receptors
- piRNApredictor 1.0 – Predict piRNA Sequences
- DBS-PSSM v3 – Predicts DNA-binding sites in Proteins
- SubMito 1.1 – Predict Protein Submitochondria Locations from Sequence
- Triplet-SVM – Predict a query sequence with Hairpin Structure as a real miRNA precursor or not
- Starfold – Predict RNA Secondary Structures
- MitPred 2.0 – Predict Mitochondril Proteins
- TAPPred – Predict Peptide TAP Binding Affinity
- MHC – Matrix Optimization Technique for Predicting MHC binding Core
- MMBPred – Predict Mutated MHC Binders
- BcePred – Predict B cell Epitope based on Physio-chemical Properties of Amino Acids
- ProPred1 / ProPred – Predict MHC Class-I / Class-II Binding Regions in Antigen Sequence
- CHpredict – Predict C-H…O and C-H…PI Interactions
- BetaTPred – Predict Beta Turns in Proteins using Existing Statistical methods
- CisPlusFinder 1.0 – Predict Cis-regulatory modules
- Contemplate 0.2 – Predict CRMs from Comparative Sequence data
- Hipsec 1.0 – Predict High-level Protein Production in Aspergillus Niger
- FlexS 2.1.2 – Predict Ligand Superpositions
- LTRsift 1.0.1 – Postprocessing of de novo predicted LTR Retrotransposon Annotations
- PHYLOSHOP 1.01 – Predicts 16S rRNA Gene Fragments in Metagenomes
- FragGeneScan 1.16 – Predicting Genes in Short and Error-prone Reads
- inteRNA 3.3 – Predict Joint Secondary Structure of two RNA Sequences
- InferPPI 1.0 – Predict Protein Interactions based on Parsimony Tendency of Domain Interactions
- MiRScan 1.0 – Predict microRNA Genes from pairs of Conserved Sequences
- CRNPRED 1.1 – Predict Secondary Structures of Protein
- MemPype – Pipeline for Predicting the Topology and the Localization of Membrane Proteins
- PPfold 3.0 – Predict Consensus Secondary Structure of RNA Alignments
- Ampred – Predict the Antimicrobial Activity of given Sequence
- Indelz – Predict the Effects of Indels and non-sense Mutations
- DriverNet 1.0.0 – Predict Functional Important Driver Genes in Cancer Genome
- PSpro 2.0 – Predict Secondary Structure, Solvent Accessibility, and Residue-residue Contacts
- MeDor 1.4 – Metaserver for Predicting Protein Disorder
- ILM 20030728 – Predict RNA Secondary Structures with Pseudoknots
- MultiMiTar – Predict mRNA Targets of a Given microRNA
- Core 0.10 – Predict Protein Complex from PPI network
- SNAP – Predicts Effect of Mutations on Protein Function
- PTMPred – Predict Post-transcriptional Modification sites from Protein sequences
- CKSAAP-Palm 20100528 – Predict Palmitoylation Sites from Protein Sequences
- sgp2 1.1 – Predict Genes by comparing Anonymous Genomic Sequences from two different Species
- seqRFLP 1.0.1 – Predicting RFLP from DNA sequences
- PROTARCH – Predict Protein Structure
- nocoRNAc 1.23 – Predict & Characterise ncRNA Transcripts in Bacteria
- Philius – Predict Protein Transmembrane Topology and Signal Peptides
- RNAmotifs 3 – Predict a motif for your own set of RNAs
- RCDP – Performs Co-evolutionary Analysis of Domains in Interacting Proteins to Predict Domain Pair(s)
- ConDens – Predict Kinase Substrates using Conservation of Local Motif Density
- RNAcontext – Predict the Sequence and Structure Preferences of RNA-binding proteins
- PICNIC – Predict Integral Copy Numbers In Cancer
- DemoDivMS 0.2 – Predict Genetic Diversity at Microsatellite DNA Marker
- SIMPA 96 – Predict Secondary Structure of Proteins
- ESAP 4 – Predict Loop Conformation in Proteins
- geneid 1.4.4 – Predict Genes in Anonymous Genomic Sequences
- PrediSi – Predict Signal Peptide Sequences
- RSpredict – Predict Secondary Structures of multiple RNA Sequence Alignments
- FrameD 20070223 – Predict Coding Regions in Prokaryotic and Eukaryotic Sequence
- RNAstrand 2.0.0 – Predict Reading Direction of Structured RNAs in Multiple Sequence Alignments
- HotKnots 2.0 – Predict Secondary Structures of RNA with or without Pseudoknots
- CentroidFold 0.0.9 – Predict RNA Secondary Structure from RNA Sequence
- IRECS 1.3 – Predict Conformation of Protein Side Chains
- BSpred – Predict Binding Site of Proteins
- IUPred – Predict Intrinsically Unstructured Regions of proteins
- Anchor – Predict Binding Regions in Proteins
- HMMTOP 2.9 – Predict Transmembrane Helices and Topology of Proteins
- SherLoc2 20091026 – Predicting Protein Subcellular Localization
- tCONCOORD 1.0 – Predict Protein Conformational Flexibility
- CpGProD – Predict Mammalian Promoters Associated with CpG Islands
- seqjoin – Predict Complete cDNA Insert Sequence
- FSFinder 2.0 – Predict Frameshifting in Genomic Sequences
- Carnac 0.98 – Predict Secondary Structure for a set of Homologous RNA Sequences
- Orphelia – Predict Genes in Metagenomic Sequencing Reads
- I-sites 2 – Predict the Local Structure of a Protein
- JPREdictor 1.23 – Predict Cis-regulatory Elements
- NucPred 1.1 – Predicting Nuclear Localization of Proteins
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